FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475722
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66061.3886261303870748No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51141.0749975826217835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13110.27558111670261204No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11470.2411072012646041No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10000.21020680145126774No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9020.1896065349090435No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8380.17615329961616238No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8290.17426143840310096No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7780.16354089152908632No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7170.15071827664055898No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6200.13032821689978602No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5280.11098919116626937No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT4930.10363195311547502No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4920.10342174631402373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)