FastQCFastQC Report
Wed 31 May 2023
EGAF00007925992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522500
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55511.0623923444976078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31910.6107177033492823No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14760.28248803827751195No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12240.2342583732057416No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10820.20708133971291867No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10550.20191387559808616No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9170.1755023923444976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8550.16363636363636364No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8520.1630622009569378No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7870.150622009569378No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6570.12574162679425838No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6330.12114832535885167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5930.11349282296650717No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT5460.1044976076555024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)