FastQCFastQC Report
Wed 31 May 2023
EGAF00007925994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491423
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42080.8562887776925379No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32050.652187626545766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29540.6011114660892958No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19390.39456842679321075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15930.32416065182134335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14800.3011662050819762No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11480.23360729961764104No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG11430.2325898462220938No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG9850.20043831892280176No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9060.1843625552731557No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG8870.18049623237007628No Hit
TATGACCGTTCCCGTCGTATTGATCTGCCGG8750.17805434422076297No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8690.17683340014610632No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8440.17174613316837023No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC7770.15811225766803752No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7720.1570948042724903No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7350.1495656491454409No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7220.14692027031701813No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6510.13247243210024764No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6470.13165846938380987No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6430.1308445066673721No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6320.12860610919716822No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6290.12799563715983991No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5560.11314081758485052No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5270.10723958789067667No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5250.10683260653245778No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5180.10540817177869169No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5150.10479769974136334No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5140.1045942090622539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)