FastQCFastQC Report
Sun 21 May 2023
EGAF00007925996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494069
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44980.9103991547739283No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32620.660231668046366No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30720.6217755009927762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19080.38618087756973213No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16460.3331518472116243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14640.29631488719187No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG11780.23842823573225602No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11540.23357061463074993No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG10530.2131281258285786No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG9590.1941024431810132No Hit
TATGACCGTTCCCGTCGTATTGATCTGCCGG9080.18377999834031278No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8850.17912477811803615No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8790.17791037284265965No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8500.17204074734500646No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8140.16475431569274737No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7920.16030149634970015No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC7340.1485622453543938No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7060.14289502073597007No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.13459658468756389No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6650.13459658468756389No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6490.13135817061989316No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6430.13014376534451666No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6330.12811975655222246No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5990.1212381266584222No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5380.10889167302542763No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5350.10828447038773936No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5290.10707006511236285No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5100.10322444840700387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)