FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456264
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19300.4230007188820507No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17040.3734679922150334No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16690.3657969947223537No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13420.2941279610050322No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12720.2787859660196728No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10490.22991075342345657No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG9730.21325373029649503No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9600.21040450265635682No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG9320.2042677046622131No Hit
ACCGGTCAGCGGGTAGCGGAATTTTGCATCAACTACTTCCGCGT8320.1823505689688426No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG7970.17467957147616292No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7910.1733645433345607No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7650.16766608805428437No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7360.1613101187032069No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7340.16087177598933952No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7150.15670752020759912No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6540.1433380674346431No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6420.14070801115143866No Hit
CTGCGGTGGGAAACCCGGACGCGGTGCCATACCCGGGTGCGGCG6280.13763961215436676No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5910.1295302719478197No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5810.12733855837848265No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5810.12733855837848265No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5320.11659916188873108No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5160.11309242017779181No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5110.11199656339312328No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5010.10980484982378623No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4900.10739396489751547No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4870.10673645082671436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)