FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456264
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66601.4596812371784758No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42650.934765837322252No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28590.6266109094734627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16710.36623533743622116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15000.32875703540055756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13690.3000455876422422No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG10700.23451335191906442No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10170.22289727000157802No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG9670.2119387021548928No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG8700.19067908053232338No Hit
TATGACCGTTCCCGTCGTATTGATCTGCCGG8520.1867339961075167No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8250.18081636947030666No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7640.16744691669735065No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7190.15758420563533393No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7120.156050006136798No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC6530.1431188960777094No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6520.1428997247207757No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6350.1391738116529027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.1354478985850297No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6080.13325618501569267No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5990.1312836428032893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.12777690109235004No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5700.12492767345221188No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4990.10936650710991881No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4920.10783230761138288No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4910.10761313625444917No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4900.10739396489751547No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4790.10498307997124472No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4720.10344888047270878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)