FastQCFastQC Report
Wed 31 May 2023
EGAF00007926000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529220
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33490.6328181096708363No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9060.17119534409130419No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8340.15759041608404822No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7740.14625297607800158No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7440.1405842560749783No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6500.12282226673217186No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6130.1158308453951098No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5780.1092173387249159No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5400.10203696005441971No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5310.10033634405351272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)