FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489891
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72021.4701229457164962No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8760.17881528748231748No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7540.15391178854071622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7290.14880861252809297No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7150.14595083396102398No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6740.1375816253003219No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6110.12472162174851141No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5620.11471939676376991No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5210.10635018810306782No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5180.10573780698155304No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5020.10247177433347417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)