FastQCFastQC Report
Sun 21 May 2023
EGAF00007926003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505376
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20130.39831729247134806No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14260.2821661495599316No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10690.2115256759323751No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10430.20638099157854745No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8010.1584958525929209No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7770.15374691318938769No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6910.13672988032672703No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6610.13079370607231053No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5700.11278731083391375No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5620.11120433103273603No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5320.1052681567783195No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5160.10210219717596404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)