FastQCFastQC Report
Wed 31 May 2023
EGAF00007926004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505376
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31170.6167685050338757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20340.40247261444943966No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15920.31501298043436965No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15770.3120448933071614No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15710.3108576584562781No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11240.22240866206547205No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9090.17986607990882036No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7250.1434575444817324No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5960.1179319951877414No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5810.11496390806053315No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5520.10922560628126385No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5480.10843411638067497No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5340.10566390172861394No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5140.1017064522256696No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5090.10071708984993352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)