FastQCFastQC Report
Wed 31 May 2023
EGAF00007926006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460892
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63511.3779800907804867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17300.37535908629353515No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14350.3113527681105335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14200.3080982095588554No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13910.3018060630256112No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10770.23367730401048403No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8000.173576456089496No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6440.1397290471520443No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5300.11499440215929112No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5280.11456046101906737No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4970.10783437334559941No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4920.10674952049504005No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4870.10566466764448071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)