FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506345
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19780.39064274358392004No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15390.3039429637895111No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11460.22632789896217007No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11040.2180331592096298No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7990.15779754910189694No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7640.15088526597478005No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6650.13133337941522086No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6510.1285684661643741No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5650.11158399905202974No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5440.10743662917575962No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5380.10625166635396814No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5100.10072183985227463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)