FastQCFastQC Report
Wed 31 May 2023
EGAF00007926008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506345
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29310.5788543384451313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20370.4022948779982028No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16510.32606226979628516No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15730.3106577531129961No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15460.30532542041493443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11640.22988278742754448No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9220.182089286948622No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7310.144367970454927No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5870.11592886273193179No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5530.1092140734084468No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5470.10802911058665535No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5410.10684414776486388No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5300.10467171592491287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)