FastQCFastQC Report
Wed 31 May 2023
EGAF00007926014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483458
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70031.4485229327056333No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.21615114446342804No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8040.16630193315655134No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5640.1166595650501181No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5600.11583219224834422No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5440.11252270104124867No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4840.10011210901464036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)