FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455772
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62981.3818312665104482No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18150.39822542850372555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13620.29883362733998575No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12330.2705300018430268No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12150.26658065875042786No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12000.2632895395065954No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11640.25539085332139755No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11220.2461757194386667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9380.20580465671432208No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9350.20514643286555556No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9240.20273294542007847No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8560.18781320484803804No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7920.17377109607435295No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7580.16631122578833277No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7300.16016780319984553No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7050.1546826044601248No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5860.1285730584590541No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.12725661076152112No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5750.12615957101357694No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5480.12023555637467856No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5280.11584739738290198No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4650.10202469655880572No Hit

[OK]Adapter Content

Adapter graph