FastQCFastQC Report
Sun 21 May 2023
EGAF00007926020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460158
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66821.4521099274596987No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18300.3976894892623838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13250.2879445755588298No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11940.2594760929941455No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11890.2583895096901499No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11240.2442639267382073No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11240.2442639267382073No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11100.24122149348701966No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9400.2042776611511698No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9020.19601962804080336No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8930.19406377809361133No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8780.19080402818162456No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7850.1705935787273067No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7840.17037626206650758No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7300.15864116238335527No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6990.15190434589858268No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6380.13864802958983652No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6330.13756144628584094No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5730.12452244663789394No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5690.12365317999469747No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5040.10952759704275489No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4930.10713711377396459No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4790.10409468052277696No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4610.10018298062839286No Hit

[OK]Adapter Content

Adapter graph