FastQCFastQC Report
Sun 21 May 2023
EGAF00007926022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447837
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60311.3466953378126416No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18910.4222518460957893No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16020.3577194380991298No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14090.31462340092489005No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9290.20744154681279128No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9180.204985295989389No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8750.19538358822518012No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8570.19136426869597645No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8440.18846142681377376No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8150.1819858564611678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7740.17283073975575935No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7660.1710443755205577No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7620.17015119340295687No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7490.1672483515207542No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7480.16702505599135398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7210.16099607669754842No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7080.15809323481534576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6880.15362732422734166No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.1482682315217367No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.1397830014045289No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6070.13554038634592497No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA5580.12459890540531487No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5470.1221426545819126No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5380.12013299481731077No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5270.1176767439939085No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5230.11678356187630767No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5080.11343412893530459No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5070.11321083340590438No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4850.10829833175909985No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4530.10115287481829326No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4490.10025969270069245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)