FastQCFastQC Report
Sun 21 May 2023
EGAF00007926023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490851
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15160.30885136222601156No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13440.2738101786489179No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9580.19517124341195188No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8940.18213266347628915No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8600.1752059178854683No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8550.17418727882799465No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8460.17235372852454206No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8410.1713350894670684No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8310.1692978113521211No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7910.1611486988923319No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7570.15422195330151103No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7500.15279585862104794No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7460.151980947375069No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7310.14892503020264805No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6910.14077591774285883No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6760.13772000057043787No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6530.13303426090605908No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC6230.12692242656121716No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6170.12570005969224876No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5810.11836585847843847No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5430.1106242016416387No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5240.10675337322323883No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5030.10247508918184947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)