FastQCFastQC Report
Sun 21 May 2023
EGAF00007926024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490851
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30540.6221847363049071No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20760.4229389366630607No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18360.3740442619043253No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15900.32392722027662163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9820.20006071088782543No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9490.19333769310849933No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9420.1919115984280362No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9400.19150414280504674No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9100.18539230846020482No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9070.18478112502572064No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8980.18294757472226805No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8790.1790767463038682No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8740.17805810724639454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.17398355101649993No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8530.1737798232050052No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8440.1719462729015526No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7680.15646295922795309No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7610.15503686454748997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7500.15279585862104794No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7080.14423929053826925No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA6790.13833118400492206No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6660.13568272245549057No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6310.128552249053175No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6140.12508887625776458No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5870.11958822534740685No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5820.1185695862899332No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5510.11225402413359656No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5480.11164284069911236No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5360.10919810696117559No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5310.10817946790370193No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.10675337322323883No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5090.10369745605081787No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4970.1012527223128811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)