FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451504
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65551.451814380382012No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19360.4287891137177079No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16640.36854601509621177No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14120.3127325560792374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9660.2139515928984018No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9010.19955526418370603No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8850.1960115525000886No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8750.1937967326978277No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8530.18892412913285375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8350.18493745348878415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8320.18427300754810588No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8320.18427300754810588No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8090.17917892200290583No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7750.17164853467521882No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7670.16987667883341012No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7630.16899075091250576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6980.15459442219780997No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6770.14994330061306213No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6450.1428558772458273No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.1386477196215316No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5910.1308958503136185No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5600.12402990892660974No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA5520.122258053084801No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5510.12203657110457494No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.11915730536163577No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5260.11649952159892273No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5160.11428470179666182No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4940.10941209823168788No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4910.1087476522910096No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4780.10586838654807045No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4760.10542542258761826No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4730.10476097664694001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)