FastQCFastQC Report
Wed 31 May 2023
EGAF00007926029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483673
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20370.42115230744738696No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18400.38042231011447813No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16980.3510636318339043No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15930.32935475000671943No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15630.32315221234180946No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13960.2886247526738106No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11370.23507617750008789No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11010.2276331323021959No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10300.212953793161909No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9730.20116897159858002No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9650.19951496155460402No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9600.19848120527711904No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9410.19455293142267605No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9320.19269217012320308No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8920.1844221199033231No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8880.18359511488133512No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8780.1815276023263651No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8750.18090734855987414No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8480.17532506466145517No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6830.14121110750445032No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6380.13190730100708536No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5850.12094948446574443No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5810.12012247944375642No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5720.11826171814428342No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5720.11826171814428342No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5680.11743471312229545No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5660.11702121061130143No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5520.11412669303434346No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5410.11185242922387645No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5230.10813090662493048No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5210.10771740411393649No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC4990.10316887649300252No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4960.10254862272651151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)