FastQCFastQC Report
Wed 31 May 2023
EGAF00007926032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442468
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59581.3465380547293815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39990.9037941726859344No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21070.4761926286194708No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15570.35188985418154534No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15240.3444316877152698No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13470.30442879485070107No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13190.2981006536065885No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9870.22306697885496807No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9860.22284097381053544No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9270.20950667618901253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9130.20634260556695624No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9080.20521258034479328No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8980.2029525299004674No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8820.19933644918954588No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8680.19617237856748962No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8670.19594637352305702No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8660.19572036847862445No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8230.186002151568023No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7960.17990001536834302No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6500.14690327888118462No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6420.1450952385257239No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6010.13582903170398763No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5730.12950089045987506No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5700.1288228753265773No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.1254327996600884No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5480.12385076434906025No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5470.12362475930462768No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5390.12181671894916693No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5390.12181671894916693No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5370.12136470886030178No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5240.11842664328267807No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5240.11842664328267807No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4990.11277651717186328No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG4720.10667438097218329No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4710.10644837592775072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)