FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447234
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19340.43243581659712815No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17010.38033780973718456No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14650.3275690130893447No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14550.3253330471296905No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13900.310799268391938No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12730.2846384666639835No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11260.25176976705706633No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10570.23634160193545212No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9770.2184538742582183No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9190.20548527169222375No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8990.2010133397729153No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8980.2007897431769499No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8970.20056614658098443No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8860.1981065840253648No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8720.19497623168184888No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8260.18469078826743943No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8130.18178403251988892No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7820.17485253804496081No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7730.172840168681272No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6010.13438155417521924No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5910.132145588215565No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5790.12946242906397992No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5590.12499049714467148No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5430.1214129516092247No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5280.11805900266974335No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5220.11671742309395082No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5130.114705053730262No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5090.11381066734640032No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4960.11090391159884981No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4950.11068031500288439No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4880.10911513883112643No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4880.10911513883112643No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4690.10486680350778341No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC4640.1037488205279563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)