FastQCFastQC Report
Wed 31 May 2023
EGAF00007926034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447234
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63501.419838384380436No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43340.9690676469141435No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21680.4847574200530371No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14830.33159375181672235No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14170.31683637648300444No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13410.2998430351896323No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12390.2770361824011591No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10340.23119888022824742No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10180.22762133469280063No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10160.2271741415008698No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9580.21420553893487523No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9510.2126403627631173No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9160.2048144819043275No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9160.2048144819043275No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9050.20235491934870783No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8830.19743579423746851No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8230.18401999847954315No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8210.1835728052876123No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7810.17462894144899538No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6460.14444340099366326No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6340.1417602418420782No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6160.1377355031147006No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5780.1292388324680145No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5730.12812084948818742No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5570.12454330395274063No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5480.12253093458905182No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5350.11962417884150132No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5330.11917698564957047No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5320.11895338905360504No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5290.11828259926570878No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.11627022990201998No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5140.11492865032622743No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4970.11112750819481523No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4770.10665557627550677No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4750.10620838308357593No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4720.10553759329567966No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4640.1037488205279563No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG4500.10061846818444037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)