FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431324
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61421.4239875360517846No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10950.2538694809470375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.14884402444566033No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC6200.14374345039923586No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6110.14165685192569855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)