FastQCFastQC Report
Wed 31 May 2023
EGAF00007926045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453156
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15930.3515345708762545No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13540.2987933515169169No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10890.2403145936498689No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9780.21581971771310543No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9040.19948980042192974No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8550.1886767470804756No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8540.18845607252248672No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8480.18713202517455357No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7670.16925738597745588No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7540.1663886167236007No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7490.1652852439336564No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7240.1597683799839349No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6790.14983802487443618No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6750.14895532664248073No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6260.13814227330102657No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6120.13505282948918254No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6050.1335081075832605No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5840.12887394186549445No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5120.1129853736902965No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5110.11276469913230763No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG4700.10371704225476436No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4580.10106894755889805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)