FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466788
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28060.6011294206363488No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25710.5507853672330908No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16460.35262260383728805No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13200.28278361911617267No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12690.2718578883775932No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11770.25214872704525393No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6470.138606819369821No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5960.1276810886312416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)