FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428276
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59061.3790172692375944No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23620.551513509979546No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14760.34463757016503377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11450.26735096059550384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11220.2619805919547208No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10520.24563599174364192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6220.14523344758987194No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.13869560750544044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)