FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431196
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11630.26971493242052336No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11010.2553363203740294No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10490.24327683930277644No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8260.1915602185549031No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6890.159788124194102No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6400.14842438241542127No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6020.13961168470950566No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5040.11688420115214426No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4900.11363741778680693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)