FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431196
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60391.4005231959480142No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23600.547314910156866No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15990.37082904294102914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11980.2778318908338667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11490.266468149055186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10990.2548724941789812No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5620.13033516080854182No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5240.12152246310262618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)