FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488706
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17110.35010824503893956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14450.29567879256649193No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12700.25986994225567106No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11630.23797538806562638No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11480.2349060580389846No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9540.1952093896944175No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9240.18907072964113394No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8110.1659484434404325No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7660.15674045336050713No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7570.15489885534452208No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7460.15264801332498476No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7340.15019254930367132No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.1489648172930146No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6940.14200766923262656No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6800.1391429612077609No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6670.13648287518467137No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6560.13423203316513405No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6360.13013959312961168No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6300.12891186111895497No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6170.1262517750958654No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5880.12031773704435796No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5650.11561143100350722No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5600.11458832099462662No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5500.11254210097686543No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5480.1121328569733132No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5390.11029125895732812No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5250.10742655093246246No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG5110.1045618429075968No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5050.10333411089694008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)