FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28250.5780571550175361No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18020.3687288472005664No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17480.357679259104656No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16340.3343523509021784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14930.30550064865174564No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13660.2795136544261785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12530.25639136822547703No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11060.2263119339643876No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9460.19357241368020855No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8860.1812950935736414No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8070.165129955433328No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7820.16001440538892506No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7710.15776356336938774No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7670.15694507536228325No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7620.15592196535340266No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7100.14528162126104446No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6850.14016607121664149No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6640.135869009179343No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6630.13566438717756688No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6580.1346412771686863No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6210.12707026310296987No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6080.12441017707988034No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6050.12379631107455198No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6000.12277320106567138No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6000.12277320106567138No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.11622529700883556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5550.11356521098574604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5510.11274672297864156No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5430.1111097469644326No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA5360.10967739295199977No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5350.10947277095022365No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5110.1045618429075968No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4980.10190175688450726No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4970.10169713488273115No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4970.10169713488273115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)