FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446100
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60941.3660614212060076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17290.3875812598072181No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14970.3355749831876261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14350.321676754091011No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12910.28939699618919523No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT12110.2714637973548532No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11270.252633938578794No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9480.2125084061869536No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8480.190091907644026No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.1761936785474109No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7840.17574534857655236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7200.16139878950907868No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6900.1546738399462004No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6740.151087200179332No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6700.15019054023761488No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6480.1452589105581708No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6480.1452589105581708No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6100.13674064111185832No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5870.13158484644698498No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5870.13158484644698498No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5840.13091235149069716No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5610.1257565568258238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5380.12060076216095046No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5370.12037659717552118No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5370.12037659717552118No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA5340.11970410221923335No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5310.11903160726294552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5190.11634162743779422No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC4920.11028917283120376No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4900.10984084286034522No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4830.10827168796234028No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4830.10827168796234028No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4710.10558170813718896No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4600.10311589329746694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)