FastQCFastQC Report
Sun 21 May 2023
EGAF00007926057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491387
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16190.3294755457511086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13750.2798201824631095No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12920.2629292187217No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12220.24868382761448715No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10540.21449488895717633No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9290.1890566905514391No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8980.18274801734681625No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8180.16646757036714444No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8020.16321148097121005No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7680.15629229100484954No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7670.15608878541760365No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7560.15385022395789877No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7170.14591350605530876No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6900.1404188551996695No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6730.13695926021648924No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6700.13634874345475154No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6310.12841202555216152No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6290.12800501437766973No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6260.12739449761593205No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6250.12719099202868617No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6240.12698748644144026No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6060.12332438587101409No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5700.11599818473016175No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5690.11579467914291587No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5640.11477715120668638No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG5580.113556117683211No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5320.10826497241481765No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5240.10663692771685047No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5220.10622991654235868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)