FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491387
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28940.5889451694896284No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19870.404365601857599No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17130.34860507095222304No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16200.3296790513383545No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13990.28470431655701106No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13780.2804306992248472No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13740.2796166768758636No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10130.20615115988009453No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9490.19312680229635704No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8540.17379377150799677No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8480.17257273798452136No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8230.1674850983033739No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7930.161379930685997No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7790.15853085246455442No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7460.1518151680854398No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7060.14367494459560387No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6950.14143638313589899No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6910.1406223607869154No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.13838379932721054No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6520.13268564288432538No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6370.12963305907563694No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6110.12434191380724358No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6020.12251036352203049No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA5950.12108582441130922No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5950.12108582441130922No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5730.11660870149189945No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5720.11640519590465356No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5720.11640519590465356No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5680.11559117355566997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5640.11477715120668638No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5450.11091054504901432No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5220.10622991654235868No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4980.10134578244845713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)