FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519643
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38330.737621790344525No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG24850.47821292695177264No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG24700.4753263298071945No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23600.45415795074695514No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21180.4075875168144284No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19930.38353254060961084No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG18120.348700935065035No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17440.3356150280096143No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11770.22650165594456195No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10830.20841231383853914No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10630.20456351764576836No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10470.2014844806915517No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG10040.19320956887709445No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8960.17242606943613212No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8810.16953947229155403No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8130.15645356523613327No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7930.15260476904336245No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7490.1441374174192667No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6900.1327834686505928No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6820.1312439501734845No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6430.12373879759758143No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6160.11854292273734082No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6140.11815804311806374No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6060.11661852464095543No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5880.11315460806746169No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.11142264978071484No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5620.10815117301685964No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5580.10738141377830548No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.10680409434938987No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5390.10372505739517322No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5260.1012233398698722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)