FastQCFastQC Report
Wed 31 May 2023
EGAF00007926070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494122
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50091.0137172601098514No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36090.7303864227862755No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23210.4697220524485856No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22590.45717454393854146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22550.4563650272604742No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19310.39079417633701796No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18830.38107997620020967No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG17850.36124681758755933No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15720.31814005448047245No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10210.20662913207669362No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10130.2050100987205589No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9680.19590303609230109No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG8810.17829604834433602No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8130.16453426481719088No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8020.16230809395250564No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7510.1519867563071468No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7210.14591538122164163No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6760.13680831859338383No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6480.1311417018469123No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6370.12891553098222708No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6330.12810601430415972No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5970.12082036420155347No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5960.1206179850320366No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5600.11333233492943039No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5590.11312995575991354No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5400.10928475153909357No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5310.10746333901344202No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5210.10543954731827364No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG5040.10199910143648735No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5030.1017967222669705No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5010.10139196392793683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)