FastQCFastQC Report
Sun 21 May 2023
EGAF00007926072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522579
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37920.725631914026396No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25380.4856681956220973No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG25230.4827978162153473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24890.47629162289338073No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21440.41027289653813104No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20890.3997481720467145No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG18450.3530566670302481No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17940.3432973770472981No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13220.2529761050482319No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11270.21566117276048216No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11250.21527845550624883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10700.20475373101483224No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG9450.180833902625249No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9080.17375363342193237No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8710.16667336421861575No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7840.15002516365946586No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7470.14294489445614922No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7470.14294489445614922No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7260.13892636328669922No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.13165473545626594No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6790.12993250781221596No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6590.12610533526988263No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6410.12266087998178267No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6330.12113001096484934No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5950.11385838313441604No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5900.11290158999883271No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5880.11251887274459939No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5630.10773490706668275No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5340.10218550688029944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)