FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502856
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49490.9841783731326662No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36150.7188936793038166No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23240.4621601412730484No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22990.45718853906486157No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22460.4466487423835054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19890.3955406716833447No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18800.37386448605565015No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG17280.34363714462987416No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17230.34264282418823677No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11160.22193232257346038No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10800.21477321539367134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.2044322828006427No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG8840.17579585408148657No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8500.16903447507835245No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8420.16744356237173266No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7980.15869354248532383No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7580.15073897895222488No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7260.14437532812574572No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6720.13363666735606217No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6710.1334378032677347No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6150.12230141432139618No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5970.11872186073150168No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5950.11832413255484671No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5870.11673321984822693No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5830.11593776349491704No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5830.11593776349491704No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5740.11414798669996977No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.11036956902174778No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.10838092813847304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)