FastQCFastQC Report
Wed 31 May 2023
EGAF00007926084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468585
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15010.32032608811635027No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12730.2716689608075376No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8050.17179380475260625No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6060.12932552258394955No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5320.1135332970538963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5160.11011876180415507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)