FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517361
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29340.5671088466274032No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24040.46466587160609324No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC18110.3500457127614954No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13860.26789804411233165No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13640.26364569420578665No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12920.24972891269345776No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12400.23967790382344242No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12100.23387924485997205No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11850.22904702905708008No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11210.21667655660167656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.21242420669513165No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9020.1743463461683428No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8680.16777453267640968No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8330.16100943055236094No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8030.15521077158889054No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7880.15231144210715536No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7330.14168056734079298No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5850.11307384978767243No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.10998123167382157No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG5590.10804834535266478No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5360.10360270681400414No Hit

[OK]Adapter Content

Adapter graph