FastQCFastQC Report
Sun 21 May 2023
EGAF00007926090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492098
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48530.9861856784624201No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27500.5588317774101906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22660.4604773845859971No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16210.32940593133887963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12940.2629557527159225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12850.26112684871712544No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12380.2515759056122967No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12270.24934057850265595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11780.23938321228698348No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11000.22353271096407626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10250.20829184430743472No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8440.17151055277607305No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8200.16663347544594775No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7790.15830180167365038No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7670.15586326300858772No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6990.14204487723989936No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6410.1302586070254299No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5410.10993745148324115No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG4950.10058971993383431No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4930.10018329682299054No Hit

[OK]Adapter Content

Adapter graph