FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520414
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29850.5735818021805716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24940.4792338407498645No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC18360.35279604315026114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14430.27727924306417584No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14160.27209106595902494No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13520.25979316467274133No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12900.24787957280165404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12900.24787957280165404No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12070.231930732071005No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11890.22847194733423776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11070.21271526131118687No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9250.17774310452831785No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8720.1675589050256142No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8490.16313934675085606No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8360.16064133555207968No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7650.1469983513126088No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7520.14450034011383245No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.10972033803856161No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5630.10818310037777616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)