FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498909
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48740.976931664892796No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28050.5622267788314101No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23510.47122821997598763No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16600.3327260081497828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13570.2719934897947321No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13000.2605685605992275No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12900.2585641870561565No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12620.25295194113555775No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12340.24733969521495905No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11670.23391039247638348No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10720.21486884381720917No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8830.1769861838531676No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8600.17237612470410435No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7900.1583455099026075No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7400.14832364218725258No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7350.1473214554157171No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7030.14090746007788996No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5420.10863704603444717No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5380.10783529661721877No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG5200.104227424239691No Hit

[OK]Adapter Content

Adapter graph