FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558075
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9490.1700488285624692No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6460.11575505084442056No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6080.10894593020651347No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5820.10428705819110334No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5820.10428705819110334No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5670.10159924741298212No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5600.10034493571652554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)