FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558075
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54290.9728083142946736No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13580.24333646911257448No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10530.18868431662410967No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9570.17148232764413385No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6940.12435604533440846No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6850.12274335886753572No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6660.11933879854858218No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5920.10607893204318415No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5860.10500380773193567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)