FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494009
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20150.40788730569685977No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18530.37509438087160357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13760.2785374355527936No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13310.26942828976800015No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12250.24797119080826463No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12060.24412510703246296No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10320.2089030766645952No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8880.1797538101532563No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8830.17874168284383482No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG8640.17489559906803318No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8480.1716567916778844No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT8430.17064466436846293No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8140.1647743259738183No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7990.16173794404555383No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6690.13542263400059515No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6620.13400565576740506No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6460.1307668483772563No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6290.12732561552522323No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5970.1208480007449257No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5940.1202407243592728No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5190.10505881471795048No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5120.1036418364847604No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC4980.10080788001838024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)