FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494009
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49951.0111151821120667No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23770.4811653228989755No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21610.43744142313196727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20790.42084253525745485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15400.31173521130181836No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13800.27934713740033074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13450.27226224623438033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13310.26942828976800015No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9690.1961502725658844No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9490.19210176332819848No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9400.19027993417123978No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA9070.18359989392905798No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA8920.1805635120007935No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8760.17732470461064473No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8740.17691985368687616No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8060.1631549222787439No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7350.14878271448495878No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7090.14351965247596704No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6940.14048327054770257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6840.1384590159288596No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6530.13218382661044636No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6270.12692076460145463No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6200.12550378636826454No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6040.1222649789781158No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5620.11376310957897529No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5580.1129534077314381No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5240.10607094202737197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)