FastQCFastQC Report
Sun 21 May 2023
EGAF00007926103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470608
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15540.33021113113249245No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8740.18571719987760513No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7520.15979328868187537No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7400.15724339577737736No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6700.14236902050113895No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5850.12430727909427805No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5830.12388229694352837No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5800.12324482371740388No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5570.11835752898378268No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5140.10922041274266481No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5070.10773297521504095No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5060.10752048413966613No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5000.10624553768741714No Hit
GACCGGGAACAGGGTATGGTCCGGACGTGCGGTGGCGTGTGGGT4940.10497059123516811No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4930.10475810015979328No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4830.10263318940604495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)