FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470608
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16140.3429605956549825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11620.2469146295855574No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10800.22949036140482099No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10610.22545303097269911No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7880.1674429673953694No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7800.1657430387923707No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7300.15511848502362902No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6160.1308945024308979No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6140.13046952028014822No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6080.12919457382789923No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6000.12749464522490056No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5530.11750756468228334No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5500.11687009145615886No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.116657600380784No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5320.11304525209941182No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5310.11283276102403698No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5300.11262026994866216No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5290.11240777887328733No Hit
GAACGTCCATCCGCCGGTGAAGCGCAGGCTC5260.11177030564716282No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5240.11134532349641314No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5050.1073079930642913No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5020.10667051983816679No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.10390813585829395No Hit

[OK]Adapter Content

Adapter graph